Caro-Astorga J, Frenzel E, Perkins JR, et al. Biofilm formation displays intrinsic offensive and defensive features of Bacillus cereus (2020). NPJ Biofilms Microbiomes, 6:3. Published 2020 Jan 15. https://doi:10.1038/s41522-019-0112-7
Zeng G, Wang Z, Huang Y, Abedin Z, Liu Y, Randhawa P. Cellular and viral miRNA expression in polyomavirus BK infection (2019). Transpl Infect Dis., 21(5):e13159. https://doi:10.1111/tid.13159
Tarazanova M, Huppertz T, Starrenburg M, et al. Transcriptional response of Lactococcus lactis during bacterial emulsification (2019). PLoS One, 14(7):e0220048. Published 2019 Jul 25. https://doi:10.1371/journal.pone.0220048
D'Agostino L, Nie Y, Goswami S, et al. Recycling Endosomes in Mature Epithelia Restrain Tumorigenic Signaling (2019). Cancer Res., 79(16):4099‐4112. https://doi:10.1158/0008-5472.CAN-18-4075
Lee H, Li C, Zhang Y, Zhang D, Otterbein LE, Jin Y. Caveolin-1 selectively regulates microRNA sorting into microvesicles after noxious stimuli (2019). J Exp Med., 216(9):2202‐2220. https://doi:10.1084/jem.20182313
van der Meulen SB, Hesseling-Meinders A, de Jong A, Kok J. The protein regulator ArgR and the sRNA derived from the 3'-UTR region of its gene, ArgX, both regulate the arginine deiminase pathway in Lactococcus lactis (2019). PLoS One, 14(6): e0218508. Published 2019 Jun 20. https://doi:10.1371/journal.pone.0218508
Wang Z, Lyu Z, Pan L, Zeng G, Randhawa P. Defining housekeeping genes suitable for RNA-seq analysis of the human allograft kidney biopsy tissue (2019). BMC Med Genomics, 12(1):86. Published 2019 Jun 17. https://doi:10.1186/s12920-019-0538-z
Xiong Y, Bedi K, Berritt S, et al. Targeting MRTF/SRF in CAP2-dependent dilated cardiomyopathy delays disease onset (2019). JCI Insigh, 4(6): e124629. Published 2019 Mar 21. https://doi:10.1172/jci.insight.124629
Walss-Bass C, Lokesh GLR, Dyukova E, et al. X-Aptamer Technology Identifies C4A and ApoB in Blood as Potential Markers for Schizophrenia (2019). Mol Neuropsychiatry, 5(1):52‐59. https://doi:10.1159/000492331
Ahn, S., Pani, B., Kahsai, A. W., Olsen, E. K., Husemoen, G., Vestrgaard, M., … Lefkowitz, R. J. (2018). Small Molecule Positive Allosteric Modulators of the β<sub>2</sub>-Adrenoceptor Isolated from DNA Encoded Libraries. Molecular Pharmacology May 16, mol.118.111948. http://molpharm.aspetjournals.org/content/early/2018/05/16/mol.118.111948.abstract
Vaishampayan, A., de Jong, A., Wight, D. J., Kok, J., & Grohmann, E. (2018). A novel antimicrobial coating represses biofilm and virulence-related genes in methicillin-resistant Staphylococcus aureus. Frontiers in Microbiology 9:221. https://doi.org/10.3389/fmicb.2018.00221
Cao, H., Villatoro-Hernandez, J., Weme, R. D. O., Frenzel, E., & Kuipers, O. P. (2018). Boosting heterologous protein production yield by adjusting global nitrogen and carbon metabolic regulatory networks in Bacillus subtilis. Metabolic Engineering 49:143. https://doi.org/10.1016/j.ymben.2018.08.001
Dijkstra AR, Starrenburg MJC, Todt T, van Hijum SAFT, Hugenholtz J, Bron PA. Transcriptome Analysis of a Spray Drying-Resistant Subpopulation Reveals a Zinc-Dependent Mechanism for Robustness in L. lactis SK11 (2018). Front Microbiol., 9:2418. Published 2018 Oct 15. https://doi:10.3389/fmicb.2018.02418
Saran, U., Guarino, M., Rodríguez, S., Simillion, C., Montani, M., Foti, M., … Dufour, J.-F. (2018). Anti-tumoral effects of exercise on hepatocellular carcinoma growth. Hepatology Communications, 2(5), 607–620. https://doi.org/10.1002/hep4.1159
Clauss-Lendzian, E., Vaishampayan, A., de Jong, A., Landau, U., Meyer, C., Kok, J., & Grohmann, E. (2018). Stress response of a clinical Enterococcus faecalis isolate subjected to a novel antimicrobial surface coating. Microbiological Research 207:53. https://doi.org/10.1016/j.micres.2017.11.006
Omony, J., de Jong, A., Krawczyk, A. O., Eijlander, R. T., & Kuipers, O. P. (2018). Dynamic sporulation gene co-expression networks for Bacillus subtilis 168 and the food-borne isolate Bacillus amyloliquefaciens: a transcriptomic model. Microbial Genomics 4(2):e000157. https://doi.org/10.1099/mgen.0.000157
Faulds KJ, Egelston JN, Sedivy LJ, et al. Glycogen synthase kinase-3 (GSK-3) activity regulates mRNA methylation in mouse embryonic stem cells (2018). J Biol Chem., 293(27):10731‐10743. https://doi:10.1074/jbc.RA117.001298
Liu, C., Cao, Y., Ko, T. C., Chen, M., Zhou, X., & Wang, R. (2018). The Changes of MicroRNA Expression in the Corpus Cavernosum of a Rat Model With Cavernous Nerve Injury. The Journal of Sexual Medicine, 15(7), 958–965. https://doi.org/10.1016/J.JSXM.2018.05.006
Pan, L., Lyu, Z., Adam, B., Zeng, G., Wang, Z., Huang, Y., … Randhawa, P. (2018). Polyomavirus BK Nephropathy-Associated Transcriptomic Signatures: A Critical Reevaluation. Transplantation Direct 4(2):e339. http://doi.org/10.1097/TXD.0000000000000752
Richardson, T. E., Wachsmann, M. , Oliver, D. , Abedin, Z. , Ye, D. , Burns, D. K., Raisanen, J. M., Greenberg, B. M. and Hatanpaa, K. J. (2018). BRAF mutation leading to central nervous system rosai‐dorfman disease. Ann Neurol., 84: 147-152. https://doi:10.1002/ana.25281
García-Giménez JL, Rubio-Belmar PA, Peiró-Chova L, et al. Circulating miRNAs as diagnostic biomarkers for adolescent idiopathic scoliosis (2018). Sci Rep., 8(1):2646. Published 2018 Feb 8. https://doi:10.1038/s41598-018-21146-x
Shakya, A. K., O’Callaghan, D. J., & Kim, S. K. (2017). Comparative Genomic Sequencing and Pathogenic Properties of Equine Herpesvirus 1 KyA and RacL11. Frontiers in Veterinary Science 4:211. https://doi.org/10.3389/fvets.2017.00211
Wang, Y., & Tatakis, D. N. (2017). Human gingiva transcriptome during wound healing. Journal of Clinical Periodontology 44(4):394. http://doi.org/10.1111/jcpe.12669
Trümbach, D., Pfeiffer, S., Poppe, M., Scherb, H., Doll, S., Wurst, W., & Schick, J. A. (2017). ENCoRE: An efficient software for CRISPR screens identifies new players in extrinsic apoptosis. BMC Genomics. http://doi.org/10.1186/s12864-017-4285-2
Yi Y, de Jong A, Frenzel E, Kuipers OP. Comparative Transcriptomics of Bacillus mycoides Strains in Response to Potato-Root Exudates Reveals Different Genetic Adaptation of Endophytic and Soil Isolates (2017). Front Microbiol., 8:1487. Published 2017 Aug 4. https://doi:10.3389/fmicb.2017.01487
Nanjareddy K, Arthikala MK, Gómez BM, Blanco L, Lara M. Differentially expressed genes in mycorrhized and nodulated roots of common bean are associated with defense, cell wall architecture, N metabolism, and P metabolism (2017). PLoS One, 12(8): e0182328. Published 2017 Aug 3. https://doi:10.1371/journal.pone.0182328
Richardson, T.E., Shen, Z.J., Kanchwala, M., Xing, C., ... Hatanpaa, K.J. (2017). Aggressive Behavior in Silent Subtype III Pituitary Adenomas May Depend on Suppression of Local Immune Response: A Whole Transcriptome Analysis. Journal Neuropathology and Experimental Neurology, Oct 1;76(10):874-882. https://doi: 10.1093/jnen/nlx072
Carvalho, S. M., de Jong, A., Kloosterman, T. G., Kuipers, O. P., & Saraiva, L. M. (2017). The Staphylococcus aureus α-Acetolactate Synthase ALS Confers Resistance to Nitrosative Stress. Frontiers in Microbiology, 8:1273. https://doi.org/10.3389/fmicb.2017.01273
Wang, Y., & Tatakis, D. N. (2017). Human gingiva transcriptome during wound healing. Journal of Clinical Periodontology, 44(4): 394. https://doi.org/10.1111/jcpe.12669
Xia, X., Larios-Valencia, J., Liu, Z., Xiang, F., Kan, B., Wang, H., & Zhu, J. (2017). OxyR-Activated expression of Dps is important for Vibrio cholerae oxidative stress resistance and pathogenesis. PLoS ONE, 12(2):e0171201. https://doi.org/10.1371/journal.pone.0171201
Wang, H., Naseer, N., Chen, Y., Zhu, A. Y., Kuai, X., Galagedera, N., … Zhu, J. (2017). OxyR2 Modulates OxyR1 Activity and Vibrio cholerae Oxidative Stress Response. Infection and Immunity, 85 (4):e00929-16. https://doi.org/10.1128/IAI.00929-16
Emami, K., Guyet, A., Kawai, Y., Devi, J., Wu, L. J., Allenby, N., … Errington, J. (2017). RodA as the missing glycosyltransferase in Bacillus subtilis and antibiotic discovery for the peptidoglycan polymerase pathway. Nature Microbiology, 2:16253. https://doi.org/10.1038/nmicrobiol.2016.253
Nijland, J. G., Shin, H. Y., Boender, L. G. M., de Waal, P. P., Klaassen, P., & Driessen, A. J. M. (2017). Improved xylose metabolism by a CYC8 mutant of Saccharomyces cerevisiae. Applied and Environmental Microbiology, 83 (11):e00095-17. https://doi.org/10.1128/AEM.00095-17
Krawczyk, A. O., de Jong, A., Omony, J., Holsappel, S., Wells-Bennik, M. H. J., Kuipers, O. P., & Eijlander, R. T. (2017). Spore heat activation requirements and germination responses correlate with sequences of germinant receptors and with the presence of a specific spoVA2mob operon in foodborne strains of Bacillus subtilis. Applied and Environmental Microbiology, 83 (7):e03122-16. https://doi.org/10.1128/AEM.03122-16
Doll, S., Proneth, B., Tyurina, Y. Y., Panzilius, E., Kobayashi, S., Ingold, I., … Conrad, M. (2016). ACSL4 dictates ferroptosis sensitivity by shaping cellular lipid composition. Nature Chemical Biology, 13(1):91–98. https://doi.org/10.1038/nchembio.2239
Nagler, K., Krawczyk, A. O., De Jong, A., Madela, K., Hoffmann, T., Laue, M., … Moeller, R. (2016). Identification of differentially expressed genes during Bacillus subtilis spore outgrowth in high-salinity environments using RNA sequencing. Frontiers in Microbiology, 7:1564. https://doi.org/10.3389/fmicb.2016.01564
Eijlander, R. T., Holsappel, S., Jong, A. de, Ghosh, A., Christie, G., & Kuipers, O. P. (2016). SpoVT: From fine-tuning regulator in Bacillus subtilis to essential sporulation protein in Bacillus cereus. Frontiers in Microbiology, 7:1607. https://doi.org/10.3389/fmicb.2016.01607
van der Meulen, S. B., de Jong, A., & Kok, J. (2016). Transcriptome landscape of Lactococcus lactis reveals many novel RNAs including a small regulatory RNA involved in carbon uptake and metabolism. RNA Biology, 13(3):353-366. https://doi.org/10.1080/15476286.2016.1146855
Dória, M., Neto, A. P., Santos, A. C., Barros, H., Fernandes, S., & Moura, C. P. (2015). Prevalence of 35delG and Met34Thr GJB2 variants in Portuguese samples. International Journal of Pediatric Otorhinolaryngology, 79(12):2187-2190. https://doi.org/10.1016/j.ijporl.2015.09.046
Maghodia AB, G. C. (2014). Complete Genome Sequence of the Autographa californica Multiple Nucleopolyhedrovirus Strain E2. Genome Announc., 2(6):6-7. https://doi.org/10.1128/genomeA.01202-14
Forrest, D.A. (2015). Novel types of RNA polymerases (PhD Thesis). Newcastle University, Newcastle upon Tyne, U.K. http://hdl.handle.net/10443/2808